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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9005760_9007102_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9005760 - 9007102
Intron Length:
1343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGTGTTGTAATT
Flanking Amino Acid:
PQRPKGQDNKVQNGSLHQKD
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
82.1
31
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
83.9
0.76
0.6
78.2
30.7
Minor 5ss
31.4
-2.1
3.2
42.1
45
Minor BPS
49.4
0.03
2.1
71.21
40.9

Associated Gene:

Gene:
YTHDF1
Ensembl Gene ID:
ENSAPLG00000005985
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019557
9005390 - 9012986
7597
ENSAPLT00000006221
9005390 - 9018219
12830
ENSAPLT00000028746
9005390 - 9012986
7597