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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9012939_9018192_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9012939 - 9018192
Intron Length:
5254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AAATCTTTAACT
Flanking Amino Acid:
RQEEEEVVRKERQNRNKQ*
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
79.3
1
1.1
84.77
35

Associated Gene:

Gene:
YTHDF1
Ensembl Gene ID:
ENSAPLG00000005985
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006221
9005390 - 9018219
12830