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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_901970_904886_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
901970 - 904886
Intron Length:
2917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAATC
Flanking Amino Acid:
HDTMSFRDSYSECNSNRDSV
Intron Amino Acid Position:
1126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
73.9
42.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
91.7
0.94
0.6
84.4
30.5
Minor 5ss
34.2
-1.8
2.8
41.7
44.8
Minor BPS
68.3
0.55
1.4
77.75
32.1

Associated Gene:

Gene:
PREX1
Ensembl Gene ID:
ENSAPLG00000010034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046636
744231 - 918369
174139
ENSAPLT00000027144
744231 - 918369
174139
ENSAPLT00000010521
815464 - 918244
102781