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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_904976_905332_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
904976 - 905332
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AGTTTTTCATCT
Flanking Amino Acid:
SYLGSDEMGSGDELPSDMRI
Intron Amino Acid Position:
1156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
100
1.24
0.5
100
0
Major PPT
83.7
0.76
0.6
84
24
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
50.7
0.1
1.8
70.87
40.2

Associated Gene:

Gene:
PREX1
Ensembl Gene ID:
ENSAPLG00000010034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046636
744231 - 918369
174139
ENSAPLT00000027144
744231 - 918369
174139
ENSAPLT00000010521
815464 - 918244
102781