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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9061458_9061963_F

Intron Information:

Intron Rank:
149337
Intron Class:
major
Intron Phase:
Intron Coordinates:
9061458 - 9061963
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCAAATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGCTTCTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
72.4
0.5
1
63.8
40.9
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
58.6
0.35
1.7
74.04
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030347
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020628
9059982 - 9072087
12106