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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9062080_9062911_F

Intron Information:

Intron Rank:
149338
Intron Class:
major
Intron Phase:
Intron Coordinates:
9062080 - 9062911
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACAG
5'SS Class:
major
3'SS Sequence:
CTAATCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
GTGACCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
58.6
42.2
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
71.1
0.47
1
65.4
40.7
Minor 5ss
24.5
-2.9
3.1
28.8
43.7
Minor BPS
67.7
0.64
1.3
76.58
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030347
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020628
9059982 - 9072087
12106