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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_910487_911320_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
910487 - 911320
Intron Length:
834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTATTTGTATCT
Flanking Amino Acid:
NYQSLLSPTVKEERTMLEDI
Intron Amino Acid Position:
1344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
75.9
0.58
0.8
69
31.6
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
49.5
0.04
2.2
75.72
41.5

Associated Gene:

Gene:
PREX1
Ensembl Gene ID:
ENSAPLG00000010034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010521
815464 - 918244
102781
ENSAPLT00000046636
744231 - 918369
174139
ENSAPLT00000027144
744231 - 918369
174139