About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_915179_915730_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
915179 - 915730
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
AGTACCATAAAT
Flanking Amino Acid:
MQATDIMRKQGPRVEISAKN
Intron Amino Acid Position:
1583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.1
0.72
0.8
81.3
30.8
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
56.7
0.29
1.8
75.13
40.4

Associated Gene:

Gene:
PREX1
Ensembl Gene ID:
ENSAPLG00000010034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027144
744231 - 918369
174139
ENSAPLT00000010521
815464 - 918244
102781
ENSAPLT00000046636
744231 - 918369
174139