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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_915799_918201_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
915799 - 918201
Intron Length:
2403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTGCCTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTGCCTTAAAG
Flanking Amino Acid:
VMDQMPPCAPRLYRLCQPPT
Intron Amino Acid Position:
1605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
84.4
29.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
65.4
0.35
1.1
63.8
36.7
Minor 5ss
42.3
-0.8
2.9
59
45.5
Minor BPS
66.8
0.39
1.6
68.4
44.9

Associated Gene:

Gene:
PREX1
Ensembl Gene ID:
ENSAPLG00000010034
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046636
744231 - 918369
174139
ENSAPLT00000027144
744231 - 918369
174139
ENSAPLT00000010521
815464 - 918244
102781