Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9211929_9217370_F

Intron Information:

Intron Rank:

142583

Intron Class:

major

Intron Phase:

Intron Coordinates:

9211929 - 9217370

Intron Length:

5442

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATCAGC

5'SS Class:

major

3'SS Sequence:

ATCTCTTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TTTATGTGAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

42.1

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

82.7

0.74

0.8

77.3

30.7

Minor 5ss

39.8

-1.1

2.8

52.6

44.1

Minor BPS

45.1

-0.5

2.2

58.03

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026846

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028610

9210436 - 9217396

6961