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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_92212_94730_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92212 - 94730
Intron Length:
2519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTCTTTCATA
Flanking Amino Acid:
PEFYNSLIWVKENDIEECGL
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
27.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
84.9
0.79
0.8
80.6
30.4
Minor 5ss
36.7
-1.5
2.8
41.8
38.8
Minor BPS
71.1
0.66
1.7
82.68
32.7

Associated Gene:

Gene:
ITCH
Ensembl Gene ID:
ENSAPLG00000013320
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013953
70810 - 99225
28416