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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_92212_96632_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92212 - 96632
Intron Length:
4421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTTAT
U12 Branch Point Sequence:
CTTTCTGTATCC
Flanking Amino Acid:
PEFYNSLIWVKLVAEWRLSR
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
27.6
Major BPS
64.7
0.37
1.2
55.4
41.7
Major PPT
84.8
0.78
0.8
79.1
32.6
Minor 5ss
36.7
-1.5
2.8
41.8
38.8
Minor BPS
50.4
-0
2.3
69.42
42.8

Associated Gene:

Gene:
ITCH
Ensembl Gene ID:
ENSAPLG00000013320
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035242
70810 - 99225
28416