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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9305703_9306087_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9305703 - 9306087
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
LAPSCAGLLFGVGNTGGALL
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
79.9
36
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.4
0.82
0.8
80.2
31.5
Minor 5ss
43.1
-0.8
3.4
65.3
45.9
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
SLC17A9
Ensembl Gene ID:
ENSAPLG00000005312
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005498
9303981 - 9322271
18291