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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9306621_9307106_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9306621 - 9307106
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AGTATTTCATTT
Flanking Amino Acid:
KTITVRKFMQVIGSGVSSVF
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88
0.85
0.7
80.3
31.8
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
45
-0.3
1.7
59.51
38.2

Associated Gene:

Gene:
SLC17A9
Ensembl Gene ID:
ENSAPLG00000005312
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005498
9303981 - 9322271
18291
ENSAPLT00000048086
9303981 - 9322271
18291