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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9314809_9322164_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9314809 - 9322164
Intron Length:
7356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TCTCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTTCTCACCT
Flanking Amino Acid:
KDGAGDPFWPRPTCRVWMVM
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
86
0.81
0.7
80.9
24.2
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
66
0.58
1.8
87.74
37.8

Associated Gene:

Gene:
SLC17A9
Ensembl Gene ID:
ENSAPLG00000005312
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048086
9303981 - 9322271
18291
ENSAPLT00000005498
9303981 - 9322271
18291