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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9325968_9329202_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9325968 - 9329202
Intron Length:
3235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAATAT
5'SS Class:
major
3'SS Sequence:
TAATTTTATCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTTACTGAACC
Flanking Amino Acid:
WAQNELDQKKLENQRLLRRN
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
76.2
28.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.6
0.53
1
67
43.6
Minor 5ss
33.5
-1.9
3.2
46.6
48.7
Minor BPS
62.4
0.37
1.7
71.04
39.7

Associated Gene:

Gene:
GID8
Ensembl Gene ID:
ENSAPLG00000005405
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044247
9323682 - 9331878
8197