About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9326432_9329202_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9326432 - 9329202
Intron Length:
2771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAATAT
5'SS Class:
major
3'SS Sequence:
TCACTTAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTTCACTTAATT
Flanking Amino Acid:
WAQNELDQKKN*
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
76.2
28.2
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
68.7
0.42
0.9
67.2
37.9
Minor 5ss
33.5
-1.9
3.2
46.6
48.7
Minor BPS
76.5
0.91
1.4
90.84
32.1

Associated Gene:

Gene:
GID8
Ensembl Gene ID:
ENSAPLG00000005405
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037510
9326364 - 9331878
5515