About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9330565_9331748_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9330565 - 9331748
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAATG
5'SS Class:
major
3'SS Sequence:
GTTTCTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATACATAAAA
Flanking Amino Acid:
NRLIMNYLVTEGFKEAAEKF
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
75.5
40.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.6
0.78
0.8
81.9
34.4
Minor 5ss
42.6
-0.8
3
57.6
46.6
Minor BPS
55.5
0.17
1.9
72.3
38.5

Associated Gene:

Gene:
GID8
Ensembl Gene ID:
ENSAPLG00000005405
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005600
9326895 - 9331878
4984
ENSAPLT00000044247
9323682 - 9331878
8197
ENSAPLT00000037510
9326364 - 9331878
5515