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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9338318_9351266_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9338318 - 9351266
Intron Length:
12949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
ATTAGCTGACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
83.2
0.75
0.7
80.6
24.7
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
46
-0.2
2.1
67.89
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028484
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038171
9336911 - 9361159
24249