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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9339702_9351266_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9339702 - 9351266
Intron Length:
11565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
ATTAGCTGACTT
Flanking Amino Acid:
VAARPQSPPRGISLKNCMMC
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
68.7
38.1
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
83.2
0.75
0.7
80.6
24.7
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
46
-0.2
2.1
67.89
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028484
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033380
9338593 - 9361159
22567