Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9357413_9359694_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9357413 - 9359694

Intron Length:

2282

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTATT

5'SS Class:

major

3'SS Sequence:

CTTCAATCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TCTGCTTCAATC

Flanking Amino Acid:

GKKKLKIFQPVIETPGASKC

Intron Amino Acid Position:

624

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

1.1

84.2

33.6

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

72.8

0.51

0.8

66.7

34.1

Minor 5ss

44.6

-0.6

2.9

70.4

39.5

Minor BPS

57.2

0.21

1.6

65.76

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028484

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038171

9336911 - 9361159

24249

ENSAPLT00000033380

9338593 - 9361159

22567