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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9421124_9422628_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9421124 - 9422628
Intron Length:
1505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGTGTTGT
5'SS Class:
major
3'SS Sequence:
TTGGTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATCCTCTAAGT
Flanking Amino Acid:
EPQESGVTLNKPLEHLALSW
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
70.3
36.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.8
0.69
0.9
75.8
38.1
Minor 5ss
44.3
-0.6
2.7
57.5
41.6
Minor BPS
49.4
0.04
1.9
69.95
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003283
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003341
9420052 - 9422881
2830