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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9423656_9424102_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9423656 - 9424102
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
TATTCATCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTGTATTCATCT
Flanking Amino Acid:
ERHNRMERDRRRRIRICCDE
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
77.7
0.62
0.8
75.2
34.4
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
49.2
0.02
2
73.02
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016892
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041603
9423469 - 9425032
1564