Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9424245_9424912_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9424245 - 9424912

Intron Length:

668

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTCGAATC

5'SS Class:

major

3'SS Sequence:

TTTTGATTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATTATTT

Flanking Amino Acid:

QEKHGDSLKQEFETVFCGKT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.5

0.51

1.2

71.2

38.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

83.8

0.76

0.8

82.1

34.6

Minor 5ss

33.3

-1.9

3.1

44.1

43.3

Minor BPS

62.5

0.47

1.8

84.55

36.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016892

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041603

9423469 - 9425032

1564