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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9431056_9431307_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9431056 - 9431307
Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTGTTTAATT
Flanking Amino Acid:
PYGPPGQKGEPGKRGELGPK
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
87
27.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.1
0.88
0.7
84.3
29.1
Minor 5ss
46.4
-0.4
2.5
62.6
42.2
Minor BPS
68.9
0.67
1.7
84.22
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003290
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003425
9426876 - 9462351
35476