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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9435429_9438040_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9435429 - 9438040
Intron Length:
2612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTTAT
U12 Branch Point Sequence:
AGCTCCTTACCA
Flanking Amino Acid:
RGLPGPRGATGPLGLQGPIG
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
67.4
0.43
1.1
57.4
41.4
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
65.4
0.48
1.7
70.44
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003290
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003425
9426876 - 9462351
35476