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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9442849_9443614_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9442849 - 9443614
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
GATGTATTATTC
Flanking Amino Acid:
PGPMGPAGDRGDIGFRGPPG
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
76.9
33.7
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
89.4
0.89
0.7
84.9
29.5
Minor 5ss
32.3
-2
2.9
32.2
42.1
Minor BPS
44.9
-0.4
1.8
52.85
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003290
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003425
9426876 - 9462351
35476