About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9444243_9444708_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9444243 - 9444708
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTCTAATTAATT
Flanking Amino Acid:
PGEIGKEGEKGNPGPPGPPG
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.6
35.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.5
0.87
0.6
84
24.1
Minor 5ss
47.8
-0.2
2.9
67.4
44
Minor BPS
58
0.33
1.8
75.07
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003290
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003425
9426876 - 9462351
35476