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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9446297_9447686_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9446297 - 9447686
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
GTGTATTTGACA
Flanking Amino Acid:
IFPDGGGDIQCPALCPPGPP
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
85.6
0.8
0.8
80.6
31.4
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
60.3
0.32
1.5
67.84
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003290
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003425
9426876 - 9462351
35476