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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9448876_9449527_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9448876 - 9449527
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATCTAAATA
Flanking Amino Acid:
PGGNGFRGPPGPYGLPGFPG
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
71.7
34.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
42.2
-0.9
3
62.5
42.2
Minor BPS
63.5
0.42
1.7
75.33
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003290
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003425
9426876 - 9462351
35476