About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9455339_9456110_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9455339 - 9456110
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
AGLPGLPGVDGLTGTDGPPG
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
80.8
0.69
0.8
75.9
32.6
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003290
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003425
9426876 - 9462351
35476