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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9460371_9461557_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9460371 - 9461557
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AA
5'SS Sequence:
CAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCACCCCCCCAA|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTCTCTTCACC
Flanking Amino Acid:
CQLLATTSAQSFQRVGPQGP
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
40.8
-0.5
3.1
54.6
36.4
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
67.3
0.53
1.7
79.35
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003290
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003425
9426876 - 9462351
35476