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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9466819_9467968_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9466819 - 9467968
Intron Length:
1150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTGTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGTCACTTAACT
Flanking Amino Acid:
NWAERFQNLNRFSHNNLRIT
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
72.6
38.9
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
77.9
0.63
0.9
76.2
37.8
Minor 5ss
33.8
-1.8
3
45.5
42.6
Minor BPS
74.6
0.85
1.5
88
36.2

Associated Gene:

Gene:
OGFR
Ensembl Gene ID:
ENSAPLG00000028652
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029590
9465348 - 9475114
9767
ENSAPLT00000044755
9465348 - 9475114
9767
ENSAPLT00000040251
9465348 - 9475114
9767
ENSAPLT00000039355
9465348 - 9475114
9767