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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9468118_9468391_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9468118 - 9468391
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTAAA
5'SS Class:
major
3'SS Sequence:
CCCTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTGTACTCATTG
Flanking Amino Acid:
AKPLTLQEIEAFKKSTEVME
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
77.8
31.4
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
82
0.72
0.8
79.3
32.7
Minor 5ss
41.2
-1
2.5
51
45.5
Minor BPS
46.9
-0.3
2
56.53
45.1

Associated Gene:

Gene:
OGFR
Ensembl Gene ID:
ENSAPLG00000028652
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040251
9465348 - 9475114
9767
ENSAPLT00000039355
9465348 - 9475114
9767
ENSAPLT00000029590
9465348 - 9475114
9767
ENSAPLT00000044755
9465348 - 9475114
9767