About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9468459_9468870_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9468459 - 9468870
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAAGTGC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTTTGATCACCT
Flanking Amino Acid:
VLEENHSYIQWLFPLREHGM
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1
59.9
39.9
Major BPS
84
0.85
0.9
75
39.9
Major PPT
85.9
0.81
0.6
85.6
21.5
Minor 5ss
36.6
-1.5
3.4
46.9
44
Minor BPS
44.1
-0.3
2.4
69.07
47.4

Associated Gene:

Gene:
OGFR
Ensembl Gene ID:
ENSAPLG00000028652
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040251
9465348 - 9475114
9767
ENSAPLT00000039355
9465348 - 9475114
9767
ENSAPLT00000029590
9465348 - 9475114
9767
ENSAPLT00000044755
9465348 - 9475114
9767