About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9468950_9469315_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9468950 - 9469315
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTTAT
U12 Branch Point Sequence:
CTTGCCTCACTT
Flanking Amino Acid:
YKNEIVFLPQGLHIETLLEL
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
80.5
33.9
Major BPS
63.6
0.34
1.4
57.4
49.1
Major PPT
94.2
0.99
0.5
93.1
16
Minor 5ss
32.5
-2
2.7
35.6
40.5
Minor BPS
50.2
0.08
2
71.5
46

Associated Gene:

Gene:
OGFR
Ensembl Gene ID:
ENSAPLG00000028652
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039355
9465348 - 9475114
9767
ENSAPLT00000029590
9465348 - 9475114
9767
ENSAPLT00000044755
9465348 - 9475114
9767
ENSAPLT00000040251
9465348 - 9475114
9767