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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9469401_9469709_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9469401 - 9469709
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGGACT
5'SS Class:
major
3'SS Sequence:
TTCTCATCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTATTCTCATCT
Flanking Amino Acid:
DLQRYRHRYPGLTESENEEE
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
69.1
41.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.3
0.73
0.8
73.9
35.7
Minor 5ss
41.5
-0.9
3.1
59
45.3
Minor BPS
60.6
0.41
1.8
80.9
40.7

Associated Gene:

Gene:
OGFR
Ensembl Gene ID:
ENSAPLG00000028652
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044755
9465348 - 9475114
9767
ENSAPLT00000040251
9465348 - 9475114
9767
ENSAPLT00000039355
9465348 - 9475114
9767
ENSAPLT00000029590
9465348 - 9475114
9767