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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9469773_9474898_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9469773 - 9474898
Intron Length:
5126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
CACTTTTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTATTCTGGATG
Flanking Amino Acid:
EPARGSGQAQFSGRRNWNAA
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
75.1
0.62
1
65.6
41
Major PPT
76.9
0.61
0.8
69.5
36.5
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
56.9
0.07
1.5
63.28
38.9

Associated Gene:

Gene:
OGFR
Ensembl Gene ID:
ENSAPLG00000028652
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044755
9465348 - 9475114
9767