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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9470522_9472940_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9470522 - 9472940
Intron Length:
2419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TGTTTCCTACTA
Flanking Amino Acid:
KLLKCFLNKEEQRSSNLLPL
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1.1
80.1
32.8
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
88.5
0.87
0.6
85
22.5
Minor 5ss
32.7
-2
3.4
47.9
47.7
Minor BPS
51.3
0.04
1.9
68.19
38.5

Associated Gene:

Gene:
OGFR
Ensembl Gene ID:
ENSAPLG00000028652
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039355
9465348 - 9475114
9767