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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9470522_9474898_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9470522 - 9474898
Intron Length:
4377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TGTTTCCTACTA
Flanking Amino Acid:
EPARGSGQAQEQRSSNLLPL
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
88.5
0.87
0.6
85
22.5
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
51.3
0.04
1.9
68.19
38.5

Associated Gene:

Gene:
OGFR
Ensembl Gene ID:
ENSAPLG00000028652
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029590
9465348 - 9475114
9767