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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9472995_9474898_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9472995 - 9474898
Intron Length:
1904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
CTTCTCCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTACACTAATT
Flanking Amino Acid:
EPARGSGQAQSSWFAIFKKL
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.8
0.67
0.7
77.4
24.6
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
53.8
0.2
2
77.66
38.2

Associated Gene:

Gene:
OGFR
Ensembl Gene ID:
ENSAPLG00000028652
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040251
9465348 - 9475114
9767
ENSAPLT00000039355
9465348 - 9475114
9767