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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9477488_9478272_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9477488 - 9478272
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
ATCATTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AATGATCTAACC
Flanking Amino Acid:
PDELIQEVREGKVMIEEEVK
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
72.6
0.51
0.8
66.8
34.8
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
47.5
-0.2
1.9
59.74
38.9

Associated Gene:

Gene:
MRGBP
Ensembl Gene ID:
ENSAPLG00000029735
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034161
9475712 - 9479756
4045