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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9478355_9478918_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9478355 - 9478918
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TCATTCATAAAA
Flanking Amino Acid:
LSTMYDMQALHESEILPFPN
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
77.9
31.1
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
80.8
0.69
0.9
86.7
24.5
Minor 5ss
36.4
-1.5
2.9
48.3
41.8
Minor BPS
55.4
0.16
1.7
66.19
39.8

Associated Gene:

Gene:
MRGBP
Ensembl Gene ID:
ENSAPLG00000029735
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034161
9475712 - 9479756
4045