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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9485578_9489315_F

Intron Information:

Intron Rank:
129801
Intron Class:
major
Intron Phase:
Intron Coordinates:
9485578 - 9489315
Intron Length:
3738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTCTTTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
35
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.6
0.8
0.7
80.9
30.8
Minor 5ss
44.5
-0.6
2.7
57.3
47.4
Minor BPS
67.1
0.53
1.5
75.8
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019857
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038608
9484615 - 9489668
5054