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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9615226_9618972_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9615226 - 9618972
Intron Length:
3747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGAAAA
5'SS Class:
major
3'SS Sequence:
TTATCCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTATATTTATCC
Flanking Amino Acid:
DFGKTVKDLPRSVLLLLKNP
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
73.4
32.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.9
0.7
0.8
73.3
36.8
Minor 5ss
27.8
-2.5
2.8
32.2
42.1
Minor BPS
53.6
0.09
1.8
65.09
40.2

Associated Gene:

Gene:
SLCO4A1
Ensembl Gene ID:
ENSAPLG00000003398
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041426
9609806 - 9622459
12654
ENSAPLT00000003478
9610806 - 9625849
15044