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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9622460_9625761_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9622460 - 9625761
Intron Length:
3302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1
62.5
38.1
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
94.4
1
0.5
91.2
20.6
Minor 5ss
28.8
-2.4
3.1
36.6
41.7
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
SLCO4A1
Ensembl Gene ID:
ENSAPLG00000003398
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003478
9610806 - 9625849
15044