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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9643831_9646031_R

Intron Information:

Intron Rank:
130638
Intron Class:
major
Intron Phase:
Intron Coordinates:
9643831 - 9646031
Intron Length:
2201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCGA
5'SS Class:
major
3'SS Sequence:
TTTATCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTATCCCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.2
59.8
46.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
75.8
0.58
0.9
71
34.6
Minor 5ss
42.8
-0.8
2.9
57.1
47
Minor BPS
53.8
0.11
1.9
73.18
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017537
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047191
9643401 - 9646243
2843