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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_964438_965195_R

Intron Information:

Intron Rank:
150783
Intron Class:
major
Intron Phase:
Intron Coordinates:
964438 - 965195
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTACACTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
84.7
0.78
0.7
79
26.7
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
62.3
0.46
2
87.41
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028628
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035114
964202 - 991201
27000
ENSAPLT00000045270
964202 - 1037130
72929
ENSAPLT00000038904
964202 - 965654
1453