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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9646853_9646946_R

Intron Information:

Intron Rank:
130637
Intron Class:
major
Intron Phase:
Intron Coordinates:
9646853 - 9646946
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
GTTTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
61
40.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87.9
0.85
0.7
83.5
31.6
Minor 5ss
42.7
-0.8
3
53
46
Minor BPS
62.5
0.47
1.6
74.56
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017537
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036347
9645168 - 9647117
1950