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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_9824265_9824837_F

Intron Information:

Intron Rank:
128271
Intron Class:
major
Intron Phase:
Intron Coordinates:
9824265 - 9824837
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TTCTCCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CATCCCCAAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
83.3
0.75
0.7
77.6
24.3
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
44.2
-0.3
2.2
63.21
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019076
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037740
9807716 - 9825466
17751
ENSAPLT00000037956
9807716 - 9825466
17751